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This page provides links to web-based tools for bioinformatics.

Tool Type Notes/Specific tools
BLAST at NCBI BLAST search, general
ProgramQueryDatabase
blastnDNADNA
blastpproteinprotein
blastxtranslated DNAprotein
tblastnproteintranslated DNA
tblastxtranslated DNAtranslated DNA
BLAST at FlyBase BLAST search, specialized BLAST search selected Drosophila and Diptera.
EMBOSS toolkit Array of bioinformatics tools
transeqTranslate a nucleotide sequence.
showorfDisplay a nucleotide sequence and translation.
revseqReverse and complement a nucleotide sequence.
UCSC Genome Browser Genome Browser, general View genomes in UCSC Genome Browser.
UCSC Genome Browser at GEP Genome Browser, custom View Drosophila fosmids in UCSC Genome Browser.
Gene Record Finder at GEP Gene Models, D. melanogaster Retrieve transcript and CDS sequences by isoform.
Gene Model Checker at GEP Annotation tools, Drosophila Compare gene models to D. melanogaster orthologs.
NCBI Database, everything Database of nucleic acid and protein sequences.
FlyBase Database, Drosophila Database of Drosophila genes and genomes.
OMIM Database, human Text-based database of human genes and inherited diseases.
PolyPhen-2 Database, human Predict the impact of missense alleles of human genes.
SIFT Database, human Predict the impact of missense alleles of human genes.
dbNSFP Database, human Predict the impact of missense alleles of human genes using five prediction algorithms
(SIFT, Polyphen2, LRT, MutationTaster and MutationAssessor).
MGI Database, mouse Database of mouse genes.
GENSCAN at MIT Gene Prediction ab initio gene prediction.
Augustus at University of Greifswald Gene Prediction ab initio gene prediction.
Clustal Omega Multiple Alignment Align multiple DNA or protein sequences.
COBALT at NCBI Multiple Alignment Align multiple DNA or protein sequences.
MUSCLE Multiple Alignment Align multiple DNA or protein sequences.