Home | Schedule | Class Projects | Tools | Readings | Glossary |
Schedule |
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Date |
Lecture |
Laboratory |
Assignments Due |
June 4 | Course Overview and Project Goals, BLAST and Homology BLAST Lecture Notes |
BLAST and Homology (PDF) data file |
pre-course survey and quiz |
June 6 | Introduction to Drosophila Dot Chromosome Project readings |
Practice Annotation Problem 1 (PDF) Dana fosmids at GEP |
none |
June 11 | Gene Models | Claim Research Projects, Research Annotation Problem |
none |
June 13 | Euchromatin and Heterochromatin
readings |
Research Annotation Problem (PDF) | none |
June 18 | Synteny Analysis
readings |
Practice Annotation Problem 2 (PDF) Dana fosmids at GEP |
Research Results: Gene Finding (example) (draft, electronic submission) |
June 20 | Research Annotation Problem | Lightning Round Presentations Research Results: Gene Finding (example) (final, electronic submission) |
|
June 25 | Preparation of the GEP Annotation Report | Research Annotation Problem
Annotation Instruction Sheet at GEP. Annotation Strategy Guide at GEP. |
none |
June 27 | Multiple Alignment example |
Research Annotation Problem | none |
July 2 | Research Annotation Problem | Research Results: Progress Report
(draft, electronic submission) (examples: Hem, Aats-ile, Ten-m) |
|
July 4 | Independence Day | ||
July 9 | Research Annotation Problem | Lightning Round Presentations Research Results: Progress Report (final, electronic submission) (examples: Hem, Aats-ile, Ten-m) |
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July 11 | Research Annotation Problem | none | |
July 16 | Human Genome Annotation | Research Annotation Human Genome Annotation (PDF, links) |
none |
July 18 | Research Annotation Human Genome Annotation |
Review of GEP Annotation Reports (draft, electronic submission) |
|
July 23 | Research Annotation Human Genome Annotation |
Review of GEP Annotation Reports (final, electronic submission) |
|
July 25 | Presentations | Final Project Presentations,
post-course survey |
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July 27 | Saturday Last Day of Classes |
Final deadline for submission of GEP Annotation Report to Washington University |